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Nov 18

One particular VIVO project that demonstrates the spirit of open access principles is Yaffle. Many VIVO implementations provide value to their host institutions, ranging from front-end access to authoritative organizational information to highlights of works created in the social sciences and arts and humanities. Yaffle extends beyond its host institution and provides a cohesive link between Memorial University and citizens from Newfoundland and Labrador. The prospects for launching Yaffle in other parts of Canada will be realized in the near future. 

Yaffle Memorial UniversityYaffle Memorial University

Memorial University has a special and serious obligation to the people of the province, Newfoundland and Labrador.  Part of Memorial's commitment to fulfill that social mandate is to engage with public and community partners in research that solves real world issues.

 

To facilitate that exchange, Memorial University developed Yaffle, a web connection and engagement application that supports Knowledge Mobilization, the bi-directional creation and sharing of knowledge. This past year the Yaffle team at Memorial’s Harris Centre joined forces with the VIVO initiative and worked together to model Knowledge Mobilization. One result of that work is the Yaffle Knowledge Mobilization Ontology, an ontology! that was designed to fit within the VIVO-ISF framework. In addition to adding a semantic layer to the Yaffle technology stack, the Yaffle team developed a content management layer in Drupal and an API for writing content to VIVO.

 

Memorial University researchers and the public use Yaffle to highlight their diverse work, unique interests and valued expertise around the province and the world! In the Spring of 2015 Yaffle will launch two additional schools in the Atlantic provinces.

 

For more information visit http://www.yaffle.ca or contact Lisa Charlong at lcharlong@mun.ca.

 

VIVO is a community sponsored project and is sustained by members like you. To become a member, please visit the DuraSpace.org website here.

 

Explore VIVO at VIVOweb.org and check out resources (including the activities of VIVO’s Working Groups) on the VIVO wiki. Track the VIVO blog and follow us onTwitter@VIVOcollab.

Nov 6

Winchester, MA  Being able to discover data and understand the connections among earth and atmospheric field experiments, research teams, datasets, research instruments, and published findings is a key objective of the U.S. National Science Foundation’s EarthCube Project program (http://earthcube.org). To reach this goal, linked and open data principles are being used to adapt the VIVO semantic web! platform so that it can be applied to large-scale field experiments involving many investigators from multiple institutions. The Project is being developed by a partnership of institutions: the NCAR/UCAR Library and the Earth Observing Laboratory within the National Center for Atmospheric Research/University Corporation for Atmospheric Research; Cornell University Library, and; UNAVCO, a non-profit university-governed consortium that facilitates geoscience research and education using Geodesy. The two-year project entitled “Enabling Scientific Collaboration and Discovery through Semantic Connections” is funded by EarthCube which supports transformative approaches to data management across the geosciences. 

VIVO is a tool that connects heterogeneous information through a single linked data point, like a person, to create a traceable path through a data system. Using VIVO, researchers can see what the connections are between organizations through many entry points. EarthCube will provide an operational example for how the VIVO networked-based data model can serve as a middle layer between technology and data stores that support large-scale, virtual organizations.

Mary Marlino, NCAR/UCAR Library Director, is excited about implementing a model for a large-scale VIVO-based linked and open data system with EarthCube. “International scientific research campaigns can involve hundreds of researchers from many different countries across many institutions. Research results are often “siloed” in a field’s journal instead of being shared widely across an entire campaign. Associated ethnographic and anthropological details are missed because data connections between aspects of the campaign do not exist. VIVO is interesting because it can map and connect the many facets of research campaigns together. This is a model for how science is conducted in the 21st century,” she said.

EarthCube will create a rich network of information, linking field experiments with particular datasets, authors, publications, and even research tools that result from, or are associated with each experiment. VIVO will use data from two sources: a recent interdisciplinary field program whose data archive is hosted by NCAR’s Earth Observing Laboratory (the Bering Sea Project), and a set of diverse research projects informed by geodetic tools, such as GPS networks and ground-based imaging, that are operated and maintained by UNAVCO.

“We envision supporting the geoscience community in terms of their real, on-the-ground data needs. EarthCube is building integrated geoscience and technology collaborations that will help evolve methods for research data collection, preservation and re-use across scientific disciplines,” explained Matthew Mayernik, who is the principal investigator on the EarthCube project and a research data services specialist in the NCAR/UCAR Library. “Making connections between different types of resources within and across data facilities will help researchers to discover and use the heterogeneous information collections that are emerging in all research fields.”

Initial data for this project will come from the NCAR Earth Observing Lab and UNAVCO data and metadata collections. Data about publications and people will come from other sources. The project also plans to develop sharing protocols for both pulling and pushing data across the VIVO network to take advantage of the growing VIVO community, reduce information duplication across instances, and allow users to see connections between people and organizations that exist across VIVO instances. 

For further information, please visit: http://www.unavco.org/projects/other-projects/earthcube/earthcube.html

http://www2.ucar.edu/atmosnews/in-brief/12278/making-research-data-more-traceable

https://www.eol.ucar.edu/content/earthcube-proposals

 

Oct 31

Brian Lowe walks the Implementation and Development Working Group through the finer details of Inferencing and Reinferencing at the October 30, 2014 Working Group Call.

If you've never had the chance to learn about this underlying technology and why it is so important for adding power to VIVO and other semantic-web based systems, a review of the Working Group Minutes will certainly pique your interest. You may access the topic at http://goo.gl/gXc2Xk

Working Group minutes are rarely shared on the VIVOweb.org blog space, but this meeting was so educational that it warrants broad distribution.

Even though it's Halloween, don't let this material scare you! For further information, contact Brian Lowe at: brianjlowe@gmail.com or

submit your questions at vivo-dev-all-request@lists.sourceforge.net or 

vivo-ontology!-request@lists.sourceforge.net

Oct 22

Boulder, CO Ten months ago, the Laboratory for Atmospheric and Space Physics (University of Colorado at Boulder) watched as the MAVEN spacecraft lifted off from Cape Canaveral Air Force Base on board an Atlas V launch vehicle. On board MAVEN is a scientific instrument (IUVS) built entirely by LASP, as well as other instruments that LASP aided in building. Ten months and 442 million miles later, MAVEN successfully completed a Martian orbital insertion maneuver and is now in a stable orbit around the red planet.

From Michael Cox, Laboratory of Atmospheric and Space Physics, University of Colorado at BoulderFrom Michael Cox, Laboratory of Atmospheric and Space Physics, University of Colorado at Boulder

These are four of the first images taken by the IUVS instrument. IUVS obtained these false-color images about eight hours after the successful completion of MAVEN’s Mars orbital insertion maneuver on September 21, 2014.

LASP is the home of the primary investigator on the MAVEN project, Bruce Jakoski; LASP is also serving as the science operations center and the science data center, as well as providing education and public outreach for the MAVEN mission. As such, LASP is highly interested in the management of the datasets that MAVEN will produce. LASP has already had a VIVO instance in place for some time that deals with metadata related to solar irradiance data collected by other Earth-orbiting missions, but we hope to expand the ontology! in the near future to be able to handle the atmospheric datasets that MAVEN will be creating.

As our VIVO instance stands today, LASP does store a fair deal of hardware infrastructure data: databases, filesystems, servers, directories and directory sizes, etc. Some of these infrastructure resources are directly related to MAVEN science data operations, providing information about where MAVEN databases live, how much space MAVEN directories are using, etc. VIVO currently serves as the authoritative source for a number of cost center type reports that aggregate and present this information to management.

However, our current dataset ontology (which is under heavy and active development) does not yet provide the capability to store MAVEN-type dataset metadata. We intend to work at developing a generic ‘Space-Based Ontology’ that could address the needs of any type of space-based scientific data. When development begins on this extended project, LASP certainly hopes to collaborate with VIVO ontologists and leverage the mutual work that is already underway in these areas.

Thanks to Michael Cox, LASP, for major contributions to this blog.

Oct 22

Thomson Reuters hosted a CONVERIS Global User Group Meeting for current and prospective users in Hatton Garden, London, on October 1-2, 2014.  About 40 attendees from the UK, Sweden, the Netherlands, European Institutions from other countries, and the University of Botswana met to discuss issues pertaining to Research Information Management Systems, the CONVERIS Roadmap, research analytics, and new features and functions being provided by CONVERIS (http://converis.thomsonreuters.com). VIVO Project Director Layne Johnson was on hand to highlight VIVO’s role in managing research information.

CONVERIS is a complete and integrated workflow solution integrating data and analytics to track the research process ranging from start to finish, including Pre- and Post-Award management, publications management, graduate student management, a research portal to share information over the web, analytics, and more.  Case studies were presented to showcase how CONVERIS is used to help drive research decision making; community initiatives, including ORCID and the use of unique identifiers to drive better research management, and CASRAI for supporting interoperability across the research lifecycle. “What’s Next for Research Information Management?” was highlighted in presentations from euroCRIS and VIVO.

Layne Johnson, Ph.D., VIVO Project Director presented a talk entitled “The Evolving Role of VIVO in Research and Scholarly Networks” which provided a brief description of VIVO, examples of VIVO implementations, future initiatives of the VIVO Project, key VIVO partnerships essential for effective research information management, and the role of DuraSpace and VIVO in building and promoting scholarly and research communities. VIVO was also represented at the Global User Group Meeting, along with ORCID, CASRAI, and euroCRIS during a panel discussion and question and answer period where attendees and panelists discussed the importance of consistent data standards and interoperability and the need for consistent data models across the research spectrum.

Breakout sessions were held on October 2nd and covered:

  • Standards Integration
  • Integration with InCites
  • Open Access; and
  • Costing and Pricing.

VIVO and CONVERIS continue to explore opportunities for partnership in an effort to enhance sharing information about researchers, research output (including publications and datasets) and data interoperability. VIVO and CONVERIS offer complementary capabilities to the research community, and ongoing discussions are being held to identify ways that the two platforms can be used synergistically to enhance access and sharing of research-related information.

Thomson Reuters is an Investor Level Corporate Sponsor of the VIVO project and participates in the governance of VIVO by serving on the VIVO Leadership Group to provide strategic and tactical input, assist in setting priorities for the VIVO Project, and identifying ways to promote the use of VIVO in the research community.

Oct 19

2104 Hackathon2104 HackathonWinchester, MA

The Fall 2014 VIVO Hackathon took place at Cornell University’s Mann Library in Ithaca, New York from Oct. 13-15. More than 30 enthusiastic developers from around the US and Canada in were in attendance. Fall colors, gorge hikes, trips to local eateries and opportunities for making friends around shared interests in leveraging the VIVO interdisciplinary semantic web! framework all contributed to a lively and successful event.

On Wednesday morning project teams participated in a closing session where accomplishments were shared with the group. “Show and tell” reports included slides and pointers to code contributions, issues being tracked, and new documentation. Slides and notes are available here at http://goo.gl/uWZU5c, including pointers to GitHub from projects producing code.
Here are a few highlights.

A data visualization hack team set out to identify and gather external authoritative data to help VIVO institutions understand their sources of grant funding. The aim was to populate a “bubble map” visualization that would highlight the location and level of support from organizations providing grant funding to universities using VIVO. It was no surprise that in the initial visualization of the map of the US many large bubbles appeared over Washington, DC, leading the team to look for more specific address information than can be found in existing data sources such as FundRef. Using federal tax id numbers, the team linked additional zip+4 and classification information to the FundRef data so that a registry accessible as linked data will make it easier for VIVO institutions to "follow the (grant) money".

The ontology! team tackled the challenges of sharing local ontology extensions to benefit other institutions and evolve VIVO ontology in concert. The team identified key requirements for a central ontology registry where VIVO installations could review available extensions and/or submit new proposed classes, properties!, or terms for review and possible adoption in subsequent VIVO-ISF ontology releases. The same platform could potentially also manage a registry of URIs for people, educational and funding organizations, journals, events, and vocabulary terms as persistent identifiers. By associating ORCID and/or VIAF records with registry entries wherever available, VIVO URIs from the registry could be linked to and/or added to Library of Congress and/or OCLC authority records used in library catalogs all over the world.

The principles of open data and linked data are central to the VIVO framework. Where and how to find the right authoritative data was a theme running through several hacks. Where do data come from? Where are data first generated? One team was concerned with how to include links to other, related things when publishing data on the web and proposed a simple version of a “VIVO requester” service that could use the vivoweb.org registry proposed above to determine who already has a persistent URI for a funding organization or the right vocabulary of equipment or research resource types for a particular purpose.

Anyone who has worked in a wiki knows that it can become unmanageable over time with many people contributing entries without a clear structure or editorial review. Making the VIVO wiki less wacky was the subject of a hack that sought to address a commonly perceived lack of documentation by improving the structure and tagging existing content and making it more clear to potential contributors where new content belongs. The DSpace wiki space demonstrates one approach to wiki structure that separates technical documentation varying with each release from introductory and explanatory documentation. Highlighting fewer topical categories, renaming files for consistency and moving technical documents into space-specific versions were among improvements made to the VIVO wiki.

Faceted browsing to support dynamic filters on browse pages or search results requires adding facets to existing page templates. The faceted browse hack added a faceted search of people by research area, and a start was made on building a more general capability that can be configured on a per-site basis without having to modify code.

Embedding Schema.org tags for SEO (search engine optimization) in VIVO requires only modest changes to page templates and will be an out-of-the-box capability in the upcoming release of VIVO v1.8. Google now builds its search results based on recognizing content and structure in Schema.org tags embedded in the HTML on web pages. This hack adds these tags to VIVO’s display pages and will make VIVO data more visible in Google and other search engines while also providing additional descriptive information in search results to benefit users.

Max Hu from Memorial University in Newfoundland demonstrated a Drupal CMS +VIVO data site: YAFFLE (http://www.yaffle.ca), where data developed and stored in VIVO is presented to users through Drupal pages providing additional entry points and help support.

Josh Hanna from the University of Florida worked on testing VIVO with the Stardog enterprise graph database (http://stardog.com) to see whether a commercial triple store could provide better performance with increasing amounts of data. Leveraging the VIVO community to negotiate academic Stardog licenses was discussed. Weill Cornell is also testing VIVO on other triple store platforms.

Patrick West reviewed the Deep Carbon Observatory Data Portal for the Deep Carbon Observatory (https://deepcarbon.net), a project led by RPI and funded by the Sloan Foundation. A Drupal front end with VIVO integration provides a variety of visualizations; persistent URI handles for every dataset link users back to VIVO as the primary metadata store. This functionality required a code modification in VIVO core to return the persistent data handles from the data repository at the time of dataset upload.

Northwestern University has offered to host the next VIVO Hackathon in 2015. More information to come.

Oct 1

August 12 - 14, 2015 in Cambridge, MA

Hyatt Regency Cambridge

The VIVO conference provides a unique opportunity for people from across the country and around the world to come together in the spirit of promoting scholarly collaboration and research discovery. This fun and exciting city will be the perfect backdrop for the 2015 conference. Join us to gain insight into the latest industry trends and innovations while enjoying all of the history, food, and culture Cambridge has to offer!

Be on the lookout for the Call for Papers coming soon!

If you have any questions, please do not hesitate to contact us.

Designing Events

+1-410-654-5525

 

vivo@designingevents.com

Sep 10

Reserve your hotel room before Friday to take advantage of special pricing.

The VIVO Project will be hosting  a hackathon event on the Cornell University campus in Ithaca, New York from October 13-15.  This event builds on the March, 2014 hackathon held in conjunction with the VIVO I-Fest at Duke University, and is open to anyone interested in actively participating in improving some aspect of the VIVO software, ontology!, documentation, testing, or related applications and tools. Chris Barnes and Ted Lawless, co-leads of the VIVO Apps & Tools working group, will be leading the event on-site, with logistics coordinated by the Cornell VIVO team.  

 Projects are deliberately open-ended and do not focus on competition — outcomes might include requirements gathering, review and prioritization of open issues, generation of sample data, developing more detailed business plans for VIVO search, generating proposals for new areas of the ontology, and writing or updating documentation, in addition to coding or working on data ingest.  Collaboration will be key, and a major goal of the event is to help grow a larger community of users motivated to contribute to one or more aspects of VIVO according to their interests, abilities, and priorities.

We encourage you to send one or more people to the event as a way to engage with other membership institutions and with a talented group of individual developers, implementers, and ontologists.

More information is available on the VIVO wiki at https://wiki.duraspace.org/x/Z4arAw, with logistics at https://wiki.duraspace.org/x/a4arAw.

Attendees are asked to register promptly at https://www.surveymonkey.com/s/9L5ZN3M, and the Hotel Ithaca room block (VIVO) is only guaranteed at the $129/night price through Friday, September 12 — 607 272-1000.

 

Sep 4

Pilot project to put relevant projects, collaborators, data at researchers’ fingertips

As observing instruments and computer modeling become increasingly refined, the amount of data generated by field studies has grown tremendously. Storing and archiving the data is a challenge in itself, but scientists also need the data to be easily accessible and connected to other relevant resources.

To help address this issue, UCAR is launching a project with two partners—Cornell University and UNAVCO—that aims to connect the dots among field experiments, research teams, datasets, research instruments, and published findings.

The two-year project, titled "Enabling Scientific Collaboration and Discovery through Semantic Connections," is funded by the National Science Foundation’s EarthCube initiative, which supports transformative approaches to data management across the geosciences (see original article here).

The project will demonstrate the benefits of a linked open data tool, known as VIVO, for managing scientific information and data. Developed by Cornell University Library in collaboration with a number of partners, VIVO is being used by over 100 organizations to create authoritative research profiles for faculty and staff as well as to link to their published studies and other relevant research. Other organizations, such as the Laboratory for Atmospheric and Space Physics at the University of Colorado Boulder, are extending VIVO to manage information related to scientific projects and research instruments.

The project aims to adapt VIVO so it can be applied to large-scale field experiments involving many investigators from a wide range of institutions. This would create a network of information linking field experiments with particular datasets, authors, publications, and even research tools that result from or are associated with each experiment.

"Someone coming from the outside would be able to find a particular paper that emerged from a field experiment and very quickly track down datasets, instruments, researchers, and so on," said Matthew Mayernik, an expert on research data services in the NCAR/UCAR Library who is the principal investigator on the project. "This is really about increasing the traceability of research and making it easier for people to find, assess, and use data."

To demonstrate the effectiveness of the approach, Mayernik and his colleagues will use VIVO for data from two sources: a recent NSF-supported interdisciplinary field program whose data archive is hosted by NCAR’s Earth Observing Laboratory (the Bering Sea Project), and a set of diverse research projects informed by geodetic tools, such as GPS networks and ground-based imaging, that are operated and maintained by UNAVCO.

If successful, Mayernik said such an approach would be expanded to other field experiments, including their data sets, researchers, publications, and research resources. 

Writer

 David Hosansky, NCAR & UCAR Communications

 

Collaborating institutions:

Cornell University

National Center for Atmospheric Research/

   University Corporation for Atmospheric Research

UNAVCO

 

Funder:

National Science Foundation (EarthCube initiative)

Aug 5

VIVO Caliente!

A few items for VIVO 2014

I didn’t have much time to sit in the Director’s Chair yesterday.  Like many people who are preparing for #VIVO14, I’ve been feeling like I’ve been playing “Whac-a-Mole” – a lot of different things to do to prepare for the VIVO Conference kept popping up.

There are a couple of things that I’d like to point out to those of you planning to be in Austin this week.  First, there will be a lot of focus on the VIVO-ISF ontology! and Data Standards (see blog post here).  Aside from a number of formal presentations and panels, you should also consider attending the Birds of a Feather VIVO-ISF ontology session with Melissa Haendel, VIVO Ontology Lead. It’s being held Friday, August 8 from 12:15-1:45 in Texas I. Come learn about what’s happening with the ontology, how to get involved, work efforts with various stakeholders, and projects of interest.  To follow ontology specific content on Twitter, use #VIVOISF! .

If you are new to the VIVO Community and would like to learn about becoming a member, a Birds of a Feather New Member session is being held from 12:15-1:15 in Texas III.  The session will focus on Member benefits and is geared to those individuals from organizations that are not currently Members.  If you’re interested in attending the session, Please RSVP to Layne Johnson at ljohnson at duraspace.org.

You’ll hear from some existing Members and you’ll have an opportunity to meet other new faces in the VIVO Community.

Last, but certainly not least, if you’re unable to be in Austin this week, we will miss you.  But, of course there will be plenty of people using Twitter, and you can follow at #VIVO14 .  

 

Here’s to a great week, virtually, or in Austin.  VIVO Caliente!