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Feb 24

The Sixth Annual VIVO Conference will be held August 12-14, 2015 at the Hyatt Regency Cambridge, overlooking Boston. The VIVO Conference creates a unique opportunity for people from across the country and around the world to come together to explore ways to use semantic technologies and linked open data to promote scholarly collaboration and research discovery.

The VIVO conference is an excellent opportunity to meet with VIVO team members from participating institutions. It also offers an open and collaborative environment to share ideas and discuss topics related to adoption and implementation of VIVO, VIVO-based tools and the opportunities created by advancing data sharing and team science.

2015 Call for Workshops now open!
Don't forget to submit your workshop proposal for the Sixth Annual VIVO Conference in August. Workshops will be taught on August 12th, and each will be 3.5 hours long. We strongly encourage proposals which incorporate a lively presentation style and which use a variety of instructional approaches (e.g. lecture, demonstration, group discussion, brainstorming, hands-on exercises, and case studies) and materials (e.g. slides, handouts, code snippets and sample data on the VIVO wiki) throughout the session.

Download a copy of the full Call for Workshops, including submission details. All submissions must be received by Monday, March 16th at 5:00 PM EST.

Follow the conversation
on Twitter at #vivo15.

Contact Information

VIVO Conference Program
Program Committee Chair: Melissa Haendel (haendel@ohsu.edu)

Logistics inquiries
VIVO Conference Manager: Rachael Hand (vivo@designingevents.com)

Feb 20

Here’s an update on the 2015 VIVO I-Fest from the I-Fest Planning Team

If you haven’t registered for the 2015 VIVO I-Fest, being held March 16-18 at Oregon Health and Science University, in Portland Oregon, Please use this link to register.

The I-Fest provides a great opportunity to meet people who are new to the VIVO community and to network with other community members who have been associated with VIVO for several years. It's a great place to learn new things and share your experiences (and challenges) with others.

Some of the topics that will be covered during the I-Fest include:

  •  Data standardization with the VIVO-ISF
  • Integration of data and systems
  • Visualizing VIVO data
  • Following the VIVO trail end-to-end
  • Finding and engaging your local VIVO community       

There will also be a panel discussion to cover “Ingesting data into VIVO” which will serve as a great place to ask your ingestion related questions.

 Several tutorials will also be offered: 

  • Extending the ontology!
  • Spinning up a VIVO instance
  • Connecting with other systems
  • Visualizing VIVO data
  • Keeping your VIVO current
  • Querying VIVO for reporting and visualization

On March 18th, there will be time for small group to do deep dives on any topic of interest - we will have one session focused on ontology work, but we welcome groups getting together on other topics such as ingestion tools, integration, visualization, etc.

To learn more about the I-Fest, visit http://goo.gl/wdOwMf

There is no registration fee to attend the I-Fest, but we do ask you to register because there is a limit to the number of people that can be accommodated.  

Please use this link to register.

If you have any questions about the I-Fest, please don't hesitate to contact us.

Melissa Haendel, OHSU 

Nicole  Vasilevsky, OHSU

Michael Conlon, UFla

Jon Corson-Rikert, Cornell University

Dave Eichmann - University of Iowa

Don Elsborg, University of Colorado, Boulder

Shahim Essaid, OHSU

Paul Friedman, Northwestern University

Eric Garbin, University of New Mexico

Violeta Ilik - Northwestern University

Layne Johnson, DuraSpace & VIVO

Ted Lawless, Brown University

Brian Lowe, Ontocale

Paul Thompson, Dartmouth

Julia Trimmer, Duke

Alex Viggio, Symplectic

Feb 4

The Sixth Annual VIVO Conference will be held August 12-14, 2015 at the Hyatt Regency Cambridge, overlooking Boston. The VIVO Conference creates a unique opportunity for people from across the country and around the world to come together to explore ways to use semantic technologies and linked open data to promote scholarly collaboration and research discovery.

The VIVO conference is an excellent opportunity to meet with VIVO team members from participating institutions. It also offers an open and collaborative environment to share ideas and discuss topics related to adoption and implementation of VIVO, VIVO-based tools and the opportunities created by advancing data sharing and team science.

2015 Call for Workshops now open! We invite all interested parties to submit workshop proposals for the Sixth Annual VIVO Conference in August. Workshops will be taught on August 12th and each will be 3.5 hours long. We strongly encourage proposals which incorporate a lively presentation style and which use a variety of instructional approaches (e.g. lecture, demonstration, group discussion, brainstorming, hands-on exercises, and case studies) and materials (e.g. slides, handouts, code snippets and sample data on the VIVO wiki) throughout the session.

Download a copy of the full Call for Workshops, including submission details at
http://cts.vresp.com/c/?DoodleDesignInc./4ef958b704/TEST/4dddd2e0e9 . All submissions must be received by Monday, March 16th at 5:00 PM EST.

Follow the conversation on Twitter at #vivo15 - http://cts.vresp.com/c/?DoodleDesignInc./4ef958b704/TEST/e76fbd5014/q=%23vivo15&src=typd

CONTACT INFORMATION

VIVO Conference Program

Program Committee Chair:  Melissa Haendel ( haendel@ohsu.edu )

Logistics inquiries

VIVO Conference Manager: Rachael Hand ( vivo@designingevents.com )

Jan 21

We're excited to invite you to the 2015 VIVO implementation Fest (i-Fest) where it doesn't matter if you're a seasoned VIVO aficionado or someone who's just begun to learn about VIVO! There will be something of interest for everyone, and the i-Fest is a wonderful way to meet other people who are part of VIVO's open-source community. We're in the initial planning stages and have identified some exciting themes where you'll be able to learn things ranging from basic concepts about the VIVO-ISF ontology! to making VIVO work with other applications. We're hoping that you can join us in Portland, Oregon so mark your calendars now!

Registration: There is no registration fee, but you will need to register for the i-Fest.  Please use this link to register. Registration is on a first come, first served basis because the number of attendees that we can accommodate is limited.

We're looking forward to seeing you,

The VIVO i-Fest Planning Group

Dates 

March 16-17, 2015 with optional working contribution sessions on March 18, 2015.

Venue

The 2015 VIVO Implementation Fest is being hosted by the Oregon Health and Science University Library in Portland, Oregon. Set high on a hill above the city and reachable by tram, OHSU will be great venue for this event, not least because of the eclectic food and cultural attractions of Portland itself.

OHSUOHSU

Program Themes

  • The semantic foundations of VIVO and the VIVO-ISF ontology
  • Understanding the VIVO application and how it’s typically used
  • Learning how to deploy VIVO
  • Data integration and interoperability with common research tools
  • Using the VIVO-ISF ontology for data ingest and search within the VIVO application
  • How to query for data to use in visualizations and other tools

Accommodations and Travel Information

  • Fly into Portland International Airport (PDX), take Max Light Rail Service or taxi
  • Recommended hotels are listed below and on the 2015 VIVO I-Fest Logistics page
  • Tram up to OHSU for the meeting (or cab or bus)

Suggested Hotels

River’s Edge

  • OHSU promotional rate of $133/nt is available
  • http://www.riversedgehotel.com/
  • Convenient transportation to OHSU: Tram, cab
  • Restaurant options nearby: Aquariva

Residence Inn 

Paramount Hotel

  • rates start at $129/nt
  • http://www.portlandparamount.com/
  • Transportation to OHSU: Bus, cab, streetcar to tram
  • Restaurant options nearby: Numerous downtown restaurants

Hotel Lucia

 

  • rates start at $144/nt
  • http://hotellucia.com/
  • Transportation to OHSU: Bus, cab, streetcar to tram
  • Restaurant options nearby: Numerous downtown restaurants
Jan 14

The Leadership Group for VIVO is now in place for 2015. The Leadership Group plays a key role in setting the strategic direction and priorities for VIVO through:

  • Establishing community direction
  • Approval of the annual budget
  • Approval of the project roadmap

To see a list of individuals who have committed to serve on the VIVO Leadership Group, please visit goo.gl/yZLXHR

The formation of the Leadership Group is part of the new governance model being adopted for all DuraSpace projects. VIVO began to adopt this model during the 2nd half of 2014 through the adoption of the VIVO Charter and establishing its leadership structure.  

The governance model is community-based and VIVO depends on three governing groups: the Leadership Group; the Steering Group; and the Management Team. Each group has varying levels of responsibility: the Leadership Group approves strategy and budget recommendations; the Steering Group provides strategic and operational oversight to the project and makes recommendations to the Leadership Group; the Management Team provides strategic and tactical guidance to ensure that actions identified in the VIVO Strategic Plan are executed and that project priorities are addressed. The Management Group also provides operational information, raises issues, and makes recommendations to the Steering Group.

The DuraSpace, and thereby the VIVO Governance Model relies solely on the participation of representatives of our open source! community.

Eligibility to serve on the VIVO Leadershp Group is determined by participation in the DuraSpace Membership Program. Member organizations who have made the greatest commitments (financial or in-kind staff commitments) to the project qualify for membership on the Leadership Group and have voting privileges. The Leadership Group is comprised of individuals from organizations that have contributed at that highest membership and corporate sponsorship levels and/or from institutions contributing in-kind resources at approved levels. There are also elected representatives from the lower membership levels (Bronze $2,500, Silver $5,000, and Gold $10,000) who serve on the Leadership Group.

For a summary of information about the VIVO governance model, please visit the VIVO governance page.

Dec 12

The American Geophysical Union (AGU), with greater than 62,000 members from more than 140 countries, advances the Earth and space sciences by catalyzing and supporting the efforts of individual scientist. AGU galvanizes a community of Earth and space scientists that collaboratively advances and communicates science and its power to ensure a sustainable future.

AGU will be holding its fall meeting next week, December 15-19 in San Francisco, CA. Nearly 24,000 attendees are expected to attend, making this the largest Earth and space science meeting in the world.  With more than 1700 sessions, the program offers a unique mix of more than 23,000 oral and poster presentations. 

Several members from the VIVO Community will be presenting their research, some of which demonstrates the central role of VIVO in their work.

UCAR (University Corporation for Atmospheric Research)

Matthew Mayernik and colleagues will be co-convening a poster and oral session which is taking place on Wednesday December 17, and will cover the topic of "Semantic Web and Provenance: Distributed Earth Science Resources in the Data Life Cycle". The presentations and posters will focus on the use of semantic web! and provenance technologies to better represent Earth science phenomena and to facilitate the discovery and use of Earth science information and data resources. There are several members from the VIVO Community who will be part of this session, and their work is described below.

The Tetherless World Constellation at Rensselaer Polytechnic Institute (RPI) 

A number of posters and oral presentations by Peter Fox, Patrick West, Stephan Zednik, Han Wang, Yu Chen, and others are among those persons on the roster of presenters from RPI. 

Deep Carbon Observatory (DCO)

Han Wang, et al. will present a poster entitled “DCO-VIVO: A Collaborative Data Platform for the Deep Carbon Science Communities”. VIVO plays an integrative role in the DCO project because thousands of DCO scientists from institutions across the globe are involved with cross-community and cross-disciplinary collaboration, a distinctive features in DCO's flexible research framework. An excerpt from Han’s abstract describes how VIVO is being used in the DCO project:Han Wang, et al. will present a poster entitled “DCO-VIVO: A Collaborative Data Platform for the Deep Carbon Science Communities”. VIVO plays an integrative role in the DCO project because thousands of DCO scientists from institutions across the globe are involved with cross-community and cross-disciplinary collaboration, a distinctive features in DCO's flexible research framework. An excerpt from Han’s abstract describes how VIVO is being used in the DCO project:

“The DCO-VIVO solution expedites research collaboration between DCO scientists and communities. Based on DCO's specific requirements, the DCO Data Science team developed a series of extensions to the VIVO platform including extending the VIVO information model, extended query over the semantic information within VIVO, integration with other open source! collaborative environments and data management systems, using single sign-on, assigning of unique Handles to DCO objects, and publication and dataset ingesting extensions using existing publication systems. We present here the iterative development of these requirements that are now in daily use by the DCO community of scientists for research reporting, information sharing, and resource discovery in support of research activities and program management.”

The Laboratory for Atmospheric an Space Physics (LASP)

Members of the VIVO Community at in Boulder, CO will also be at the AGU meeting. A poster describing LASP's work using VIVO to create a semantic database of metadata about LASP datasets will be presented. Anne Wilson, Michael Cox, Doug Lindholm, Irfan Nadiadi, and Tyler Traver and will describe LASP’s work and VIVO’s key role:

"The LASP extended metadata repository, LEMR, is a database of information about the datasets served by LASP. The database is populated with information garnered via web forms and automated processes. This information can be pulled dynamically for many purposes. Web sites such as LISIRD can include this information in web page content as it is rendered to ensure that users get current, accurate information. It can also be pulled to create metadata records in various metadata formats.

The LEMR database has been implemented as a RDF triplestore, coupled with SPARQL over HTTP read access to enable semantic queries over the repository contents. To create the repository, the LASP team leveraged VIVO to manage and create new ontologies.. A variety of ontologies were used in creating the triplestore, including ontologies that come with VIVO, such as FOAF. Also, the W3C DCAT ontology! was integrated and extended to describe properties! of data products that need to be captured, such as spectral range. The LASP presentation will describe the architecture, ontology issues, and tools used to create LEMR and plans for its evolution." 

Interested in following AGU Fall 2014 happenings? Here’s the hashtag: #AGU14

Dec 12

15 VIVO Goals for 2015-2016 Are Identified and Selected by the VIVO Strategy Group are Presented for Comment

Last week, eleven members of the VIVO Strategy Group met on December 1 & 2 at Northwestern University's Evanston, IL campus to set priorities for the upcoming two years. Prior to the meeting, a 3-question survey was sent to 41 people who are members of the VIVO Leadership Group, the VIVO Steering Group, the VIVO Management Team, and the VIVO Strategy Group. 

Survey Questions:
  • What do you think the value proposition is for VIVO?  
  • What do you see as VIVO’s top goals in the next 2-3 years?
  • What do you think are the key issues and challenges for VIVO that need to be addressed in the next 2-3 years?

Twenty people answered the survey and provided a total of 181 bulleted responses. The answers were categorized into three strategic themes: Community; Sustainability; and Technology (see survey results and other meeting information here).

Key objectives of the VIVO Strategy Meeting:
  • develop a shared understanding of VIVO's value proposition; 
  • discuss VIVO goals & issues; 
  • prioritize VIVO goals; and 
  • develop high-level action plans for prioritized VIVO goals.
Working Value Proposition

A working value proposition was drafted for further refinement: VIVO provides an integrated, searchable, view of the academic work of an organization.

Five goals were selected for each strategic theme and are presented below. High level action plans are being finalized and will be communicated in the very near future.

Top 15 2015-2016 goals for VIVO categorized by Strategic Theme:
Community:
  1. Increase productivity of the VIVO project.
  2. Develop a more transparent governance operation with clear roles and responsibilities.  
  3. Increase the number of contributors and the work they do to support software development, ontology! development, and other activities in the community.
  4. Maintain a current and dynamic web presence.
  5. Develop key goals and activities for leveraging key partnerships outside of the VIVO community (e.g. ORCID, CRIS, CASRAI,W3C, SciEnCV, CRediT, etc.) and align with VIVO strategy.
Sustainability:
  1. Create an inclusive and welcoming open source! community aligned with VIVO's mission.
  2. Develop a clear value proposition for VIVO that explains the benefits of VIVO, the data model and the ontology.
  3. Establish a road map.
  4. Increase adoption by growing installed base.
  5. Clearly identify and aggressively promote the value membership.
Technology:
  1. Develop democratic code contribution (and ontology contribution) processes. 
  2. Clarify the Core VIVO architecture, including guidelines and processes for making contributions available.
  3. Develop VIVO search for cross-institutional and cross-platform use, thus expanding the capabilities to existing and future users.
  4. Improve/increase VIVO core modularity with plug and play reasoners, triple stores, and search engines, e.g. to allow 3rd party and user-developed functionality to be easily ntegrated.
  5. Institute a distributed, team-based development and release management process for all VIVO project work.
Feedback:

Your comments and strongly encouraged. Please send your feedback to Layne Johnson, VIVO Project Director at ljohnson at duraspace.com.

Dec 1

This week a 15 member VIVO Strategy Team is meeting at the Northwestern University Library on the Evanston campus to review issues and set goals for the VIVO project.

Representatives include members of the VIVO Leadership Group, the VIVO Steering Group, the VIVO Management Team and others who serve on the Strategy Team. Meeting goals include:

  • Review and Agree Upon Shared Understanding VIVO's Value Proposition
  • Identify and Discuss Key VIVO Goals & Issues
  • Prioritize Key VIVO Goals & Issues
  • Develop High Level Action Plans for Prioritized VIVO Goals & Issues
  • Identify Key Means for Communicating and Vetting the Strategic Plan
  • Develop Next Steps
 
Priorities will be established along three Strategic Themes: Community, Sustainability, and Technology. Strategy survey results from 19 respondents will be reviewed and used to establish priorities. High level action plans will be created for five of the highest priority goals from each of the Strategic Theme categories. The strategic priorities and action plans will help the VIVO Community focus on key goals that need to be accomplished and contribute to building better roadmaps for the successful future of the VIVO project.
Nov 18

One particular VIVO project that demonstrates the spirit of open access principles is Yaffle. Many VIVO implementations provide value to their host institutions, ranging from front-end access to authoritative organizational information to highlights of works created in the social sciences and arts and humanities. Yaffle extends beyond its host institution and provides a cohesive link between Memorial University and citizens from Newfoundland and Labrador. The prospects for launching Yaffle in other parts of Canada will be realized in the near future. 

Yaffle Memorial UniversityYaffle Memorial University

Memorial University has a special and serious obligation to the people of the province, Newfoundland and Labrador.  Part of Memorial's commitment to fulfill that social mandate is to engage with public and community partners in research that solves real world issues.

 

To facilitate that exchange, Memorial University developed Yaffle, a web connection and engagement application that supports Knowledge Mobilization, the bi-directional creation and sharing of knowledge. This past year the Yaffle team at Memorial’s Harris Centre joined forces with the VIVO initiative and worked together to model Knowledge Mobilization. One result of that work is the Yaffle Knowledge Mobilization Ontology, an ontology! that was designed to fit within the VIVO-ISF framework. In addition to adding a semantic layer to the Yaffle technology stack, the Yaffle team developed a content management layer in Drupal and an API for writing content to VIVO.

 

Memorial University researchers and the public use Yaffle to highlight their diverse work, unique interests and valued expertise around the province and the world! In the Spring of 2015 Yaffle will launch two additional schools in the Atlantic provinces.

 

For more information visit http://www.yaffle.ca or contact Lisa Charlong at lcharlong@mun.ca.

 

VIVO is a community sponsored project and is sustained by members like you. To become a member, please visit the DuraSpace.org website here.

 

Explore VIVO at VIVOweb.org and check out resources (including the activities of VIVO’s Working Groups) on the VIVO wiki. Track the VIVO blog and follow us onTwitter@VIVOcollab.

Nov 6

Winchester, MA  Being able to discover data and understand the connections among earth and atmospheric field experiments, research teams, datasets, research instruments, and published findings is a key objective of the U.S. National Science Foundation’s EarthCube Project program (http://earthcube.org). To reach this goal, linked and open data principles are being used to adapt the VIVO semantic web! platform so that it can be applied to large-scale field experiments involving many investigators from multiple institutions. The Project is being developed by a partnership of institutions: the NCAR/UCAR Library and the Earth Observing Laboratory within the National Center for Atmospheric Research/University Corporation for Atmospheric Research; Cornell University Library, and; UNAVCO, a non-profit university-governed consortium that facilitates geoscience research and education using Geodesy. The two-year project entitled “Enabling Scientific Collaboration and Discovery through Semantic Connections” is funded by EarthCube which supports transformative approaches to data management across the geosciences. 

VIVO is a tool that connects heterogeneous information through a single linked data point, like a person, to create a traceable path through a data system. Using VIVO, researchers can see what the connections are between organizations through many entry points. EarthCube will provide an operational example for how the VIVO networked-based data model can serve as a middle layer between technology and data stores that support large-scale, virtual organizations.

Mary Marlino, NCAR/UCAR Library Director, is excited about implementing a model for a large-scale VIVO-based linked and open data system with EarthCube. “International scientific research campaigns can involve hundreds of researchers from many different countries across many institutions. Research results are often “siloed” in a field’s journal instead of being shared widely across an entire campaign. Associated ethnographic and anthropological details are missed because data connections between aspects of the campaign do not exist. VIVO is interesting because it can map and connect the many facets of research campaigns together. This is a model for how science is conducted in the 21st century,” she said.

EarthCube will create a rich network of information, linking field experiments with particular datasets, authors, publications, and even research tools that result from, or are associated with each experiment. VIVO will use data from two sources: a recent interdisciplinary field program whose data archive is hosted by NCAR’s Earth Observing Laboratory (the Bering Sea Project), and a set of diverse research projects informed by geodetic tools, such as GPS networks and ground-based imaging, that are operated and maintained by UNAVCO.

“We envision supporting the geoscience community in terms of their real, on-the-ground data needs. EarthCube is building integrated geoscience and technology collaborations that will help evolve methods for research data collection, preservation and re-use across scientific disciplines,” explained Matthew Mayernik, who is the principal investigator on the EarthCube project and a research data services specialist in the NCAR/UCAR Library. “Making connections between different types of resources within and across data facilities will help researchers to discover and use the heterogeneous information collections that are emerging in all research fields.”

Initial data for this project will come from the NCAR Earth Observing Lab and UNAVCO data and metadata collections. Data about publications and people will come from other sources. The project also plans to develop sharing protocols for both pulling and pushing data across the VIVO network to take advantage of the growing VIVO community, reduce information duplication across instances, and allow users to see connections between people and organizations that exist across VIVO instances. 

For further information, please visit: http://www.unavco.org/projects/other-projects/earthcube/earthcube.html

http://www2.ucar.edu/atmosnews/in-brief/12278/making-research-data-more-traceable

https://www.eol.ucar.edu/content/earthcube-proposals